Page 2

A&P 1
Lab Manual

If you disable the "Active Content" in your browser you may not be able to view the animations or videos supplied in this lab. If prompted you should "Allow Blocked Content".
Lab Index Page 1 Page 2 Lab 2

Lab 1
Microscopy


CONTENT

1) Compound Light Microscope

Basic Theory of Light Microscopy
Examples of Compound Light Microscopy
Microscopic Observations
Light Microscopy Questions
Virtual Light Microscopy
Virtual Light Microscopy Questions

2) Electron Microscopy

Examples of Electron Microscopy
Virtual Electron Microscope
Virtual Electron Microscopy Questions

What Do I Need To Hand In For This Lab?

Sketches

Compound Light Microscope
Bacteria Types (3)
Adipose Tissue Cross section
Pond Mix

Questions

Light Microscopy Questions 1-4
Virtual Light Microscopy Questions 1-4
Virtual Electron Microscopy Questions 1-6

Cover Page

Lab 1 Cover Page


FORMS REQUIRED FOR THIS LAB

MS WORD PDF
Lab 1 Cover Page (not available) Lab 1 Cover Page
Sketch 1 Sketch 1
Sketch 2,3,4 Sketch 2,3,4
Microscopy Questions Microscopy Questions
Access each of the listed documents above and print them off. When you submit your lab report you will need to compile all of the documents listed above, stapled together in the order listed in the table above. Sketches must be performed free hand (not traced or copy and pasted). Sketches must be performed using the printed links as given above. You are not allowed to perform the sketches on blank sheets of paper or lined sheets of paper. Sketches performed without using these forms above will not be accepted.  You can use the MS WORD links to access the questions, tables and charts in order to input your values or answers electronically and then print them off when finished to include with your lab report. Alternatively you can print the questions, tables and charts forms out and input your values or answers by hand. The PDF file format will not allow you to input values or answers electronically. Please collate and order the pages in your lab report in the order they are listed in the table above. The cover page is only available using the PDF file format.

Types of Microscopes

Light Microscope (LM)

The models found in most schools, use compound lenses and light to magnify objects. The lenses bend or refract the light, which makes the object beneath them appear closer.

Stereoscope

This microscope allows for binocular (two eyes) viewing of larger specimens. (The spinning microscope at the top of this page is a stereoscope)

Scanning Electron Microscope (SEM)

This microscope allows scientists to view a universe too small to be seen with a light microscope. SEMs dont use light waves; they use electrons (negatively charged electrical particles) to magnify objects up to two million times.

Transmission Electron Microscope (TEM)

This microscope also uses electrons, but instead of scanning the surface (as with SEM's) electrons are passed through very thin specimens.


1) Compound Light Microscope

The microscope has been one of the key instruments used by the biologist for hundreds of years.  A number of improvements were made to light microscopes during the first two or three centuries after their invention. Since the turn of the century, however, there have been no significant improvements. There have been continuous advances in the methods of preparing and analyzing specimens. There have also been modifications to the light microscope which permit new methods of analysis (phase contrast, fluorescence, confocal laser scanning, etc.) and the introduction of the electron microscope which can push microscopic analysis to the molecular level.

Link to a more thorough discussion of the history of microscopy

A) Basic Theory of Light Microscopy

Magnification

The main purpose of a microscope is to magnify and increase the visibility of a small object. The magnification of a lens is always engraved on it. You will be using a compound microscope which has a system of lenses. The total
magnification of the scope is a product of the magnifications of the objective lens and the eyepiece (or ocular lens). For example, using a low-power objective (magnification = 3.4X) and a standard eyepiece (magnification = 10X), the total magnification is 34X.

Link to a more thorough discussion of magnification

Resolution

Resolution is an important attribute of a microscope. The limit of resolution of an optical system is the minimum distance by which two objects can be separated and still be perceived as distinct. Two points placed closer than this limit will be seen as one. Greater resolution allows one to see an object more sharply and to make out internal detail.

 Link to a more thorough discussion of resolution

Illumination

Adequate lighting will allow you to obtain the best resolution possible. Illumination must be adjusted for each objective every time a change is made. The adjustments which will affect illumination on your microscope involve changing the iris diaphragm. The iris diaphragm is used to match the aperture (opening) to that of the objective. It should not be used to control the intensity of illumination. With some unstained or transparent specimens, it may be necessary to close the iris slightly to improve contrast. This is always done at the expense of resolution. Too much light through the diaphragm will wash out the specimen you are viewing similar to viewing an object with a bright light in the background.

Link to a more thorough discussion of illumination

SKETCH 1
**Sketch a compound light microscope and label the following:
Eyepiece, Objective, Stage,
Fine Adjustment, Coarse Adjustment, Diaphragm

 


Figure 1.1
Compound Light Microscope
 

Figure 1.2 Diaphragm
 

Figure 1.3 Objective
 

Figure 1.4 Ocular (Eye Piece)
 

Figure 1.5 Stage
 

Link below to quiz yourself on the parts of a compound light microscope. You do not need to submit the answers for the quiz with your lab report.

http://www.biologycorner.com/microquiz/index.html

How to use a Microscope

An alternative link to the Microcope video is given below.

http://www.youtube.com/watch?v=X-w98KA8UqU&feature=related

 

B) Examples of Compound Light Microscopy

Figure 1.6
Mouse Egg Cells
 

Figure 1.7
Cross Section of Skin
 

Figure 1.8
Amoeba
 

Figure 1.9
Cross Section of Bone
 



Figure 1.10
Alveolar Cell Carcinoma
 

In the United States, lung cancer is the leading cause of cancer-related death among both men and women. The popularity of smoking tobacco throughout the twentieth century is usually considered accountable for the prevalence of the disease, cigarettes having been linked to about 90 percent of lung cancer cases in men and 80 percent in women. Yet, alveolar cell carcinoma appears to have no relationship to smoking. Also known as bronchoalveolar carcinoma, alveolar cell carcinoma instead appears to be most likely to develop in individuals whose lungs have been scarred by other diseases, such as scleroderma, tuberculosis, or fibrosis. The progression of this variety of carcinoma can be very slow, and patients with the disease often have a better prognosis than people with other kinds of lung cancer. View the microscopic image above of alvolar cell carcinoma. The darker purple organelles you view in the individual cells are the nuclei of the alveolar cells in the lungs. Normal nuclei should be round or oblong in shape. Notice that many of the nuclei are misshapen (triangular or cuboidal). These misshapened nuclei are indicative of abnormal carcinoma cells. Click on the link below to view the same image above with many of the cancer cells circled in green.

INDICATED CANCER CELLS



Figure 1.11 Human Cheek Cells
(The nucleus is the darker, spherical organelle near the center of the cell)

C) Microscopic Observations

I) Bacteria

Observe the following image which illustrates the three different types of bacteria. Use the links given below to view microscopic slides of each of the three shapes of bacteria.

SKETCH 2
**Identify the different shapes of bacteria in your sketch as: Baccilus, Cocci, Spirillum

Baccillus (Rod shaped)

Cocci (Spherical shaped)

Spirillum (Spiral shaped)

Click here to see
rod shaped bacteria

Click here to see
spherical shaped bacteria

Click here to see
spiral shaped bacteria


Figure 1.12 Types of Bacteria


II) Adipose Tissue

The image to the right is a 100X microscopic view of a cross section of adipose tissue. The large white structures are the adipose (fat) cells. The smaller, dark red structures are the nuclei of the individual cells.

SKETCH 3
**Sketch just a few of the cells in the image to your right. The dark red objects you can see are the nuclei of the cells
 


Figure 1.13
Adipose Tissue Cross Section
 


III) Pond Mix

Video of a 100X microscopic view of a drop of pond water. Click on the arrow to view the video.

The variety of organisms you see here would be typical of most freshwater ponds. The small spherical organisms seen floating about are bacteria. The large and small, fast moving, green organisms that are darting about are paramecium feeding on bacteria. The hat shaped organisms are vorticella again feeding on bacteria. The darker greenish brown masses are bacterial colonies and algae. The green rectangular organisms are green algae. The long, thin strands scattered throughout the sample are blue-green algae.

SKETCH 4
**Observe the video and sketch some of the variety of living organisms present

 

 

An alternative link can be found below:

http://www.youtube.com/watch?v=gd3UOqxabuk


Some Interesting Movies Using Light Microscopy

Click on the links below to see a Water Bear moving under a microscopic power of 250X

Water Bear 1

Water Bear 2

An amoeba engulfs a food item in a process called phagocytosis at a magnification of 400x

Amoeba 1

Pseudopodia, or false feet, extend and retract as this amoeba moves across the microscope field at a magnification of 100x

Amoeba 2

An up close and personal look at the internal workings of a paramecium at a magnification of 400x

Paramecium 1

A group of swimming paramecia (the smaller organisms), looking more like a bunch of bumper cars as they collide and rebound off of one another

Paramecium 2

Using the microscope to view the differences between normal cells and cancer cells

Human Cancer Cells


QUESTIONS
D) Light Microscopy Questions

1) What is the function of the diaphragm?
2) Describe the advantage of having a microscope of highest resolution.
3) Calculate the magnification of the lens system of the following:
     
a) Ocular-10X Objective-10X
     
b) Ocular-10X Objective-43X
     
c) Ocular-10X Objective-1X
     
d) Ocular-10X Objective-2X
4) What is the most important attribute of a microscope?

Click Here for a MS WORD version of the questions

Click Here for a PDF version of the questions


E) Virtual Light Microscopy

VIRTUAL LAB

**Go to the following site to link to a virtual light microscope. At the virtual microscope site you will need to perform the tutorial so that you learn how to use the microscope. Click on the GETTING STARTED link on the upper left side.  After learning how to use the microscope and viewing the speciments, answer the questions given below on Virtual Light Microscopy. virt micro


VIRTUAL LIGHT MICROSCOPE

A) Perform the tutorial (Getting Started) so that you learn how to use the microscope
B)
There are four slides to view. Choose to view the cheek smear slide. You may view the others if you wish however the questions will pertain to only the cheek smear slide.
C) You will be using the 10X, 40X and 100X objective lens powers
D) Use the focus and illumination slide bars to see the cheek cells better.
E) Answer the Virtual Light Microscopy Questions provided below.

You can use the page link below to access a labeled image of the microscope

Click Here to View a Labeled Virtual Microscope (MS WORD)

Click Here to View a Labeled Virtual Microscope (PDF)


QUESTIONS
F) Virtual Light Microscopy Questions

1) How many individual cells can you count at the following objective powers of magnification?
      a) 10X
      b) 40X
      c) 100X
2)
If the eyepiece has a 10X power, what is the total magnification when you observe cells at objective power of 40X?
3)
At what power are you able to discern the nucleus of the cells? (The nucleus is the large, darker organelle located near the center of the cell)
4)
Describe what happens if there is too much illumination.

Click Here for a MS WORD version of the questions

Click Here for a PDF version of the questions


Please Find Below Links to Other Virtual Light Microscopy Sites

http://micro.magnet.fsu.edu/primer/virtual/magnifying/index.html

http://micro.magnet.fsu.edu/primer/virtual/translational/index.html

http://micro.magnet.fsu.edu/primer/virtual/focusdepth/index.html


2) Electron Microscopy

Two types of electron microscopes have been developed over the past half century: the Transmission Electron Microscope (TEM) and the Scanning Electron Microscope (SEM). These instruments contain magnetic lenses that focus a beam of electrons on the specimen. Electrons used in this fashion generate a wavelength that may be 100,000 times shorter than that of visible light. As a result, electron microscopes have resolving powers as much as 400 times that of light microscopes and 200,000 times that of the human eye. 

The TEM bombards a thin specimen with electrons. Depending on their composition, the components of the specimen either transmit, absorb or deflect the electrons. The image produced on a photographic plate is a visual translation of this interaction of electrons with the specimen. The transmission electron microscope gave scientists their first look at the world of viruses, invisible by light microscopy, and today permits us to see molecules and atoms. 

The SEM is quite different from the TEM. It is designed to generate three-dimensional images of surface detail. This microscope moves an electron beam back and forth over the surface of a metal-coated specimen causing the emission of secondary electrons from the specimen. The secondary electrons produce the  stunning images characteristic of scanning electron microscopy.

Video of how an electron microscope works. Click on the arrow to view the video.

 

An alternative link can be found below:

http://www.youtube.com/watch?v=fToTFjwUc5M

 

 

 

 

Figure 1.14
Transmission
Electron Micrograph (TEM)
 

Figure 1.15
Scanning Electron Micrograph (SEM)
 

A) Examples of Electron Microscopy


Figure 1.16
Transmission Electron Micrograph
of Polio Virus
 

Figure 1.17
Transmission Electron Micrograph
of Ebola virus
 

Figure 1.18
Scanning electron micrograph of
HIV grown in cultured lymphocytes

 

Figure 1.19
Scanning electron micrograph of
Treponema pallidum
(The causative agent of syphilis)

 

Video of numerous scanning electron microscopic views of cells from the human body. Click on the arrow to view the video.

 

An alternative link can be found below:

http://www.youtube.com/watch?v=MYKM_iGY9K8

 

B) Virtual Electron Microscope

To observe (resolve) objects smaller than 0.2 m requires the utilization of Electron Microscopy (EM). Rather than using visible light, electron microscopes focus a beam of electrons on a very thin section of biological material that has been chemically preserved (fixed) and embedded in plastic. Electrons have a much shorter wavelength than the photons of visible light used in LM. Since resolving power is inversely related to wavelength, modern electron microscopes can resolve objects of approximately 0.2 m. It is this tremendous increase in resolution that has allowed biologists to discern the precise details of cell structure. Although a powerful tool, only chemically preserved cells can be observed with EM. The routine observation of living cells by electron microscopes is a goal yet to be achieved.

The type of electron microscopy described above is generally referred to as Transmission Electron Microscopy (TEM). In TEM, the beam of electrons passes directly through the sample except where the electrons are deflected by atoms of heavy metals (lead and/or uranium) that have been used to "stain" the specimen; the transmitted electrons are focused onto photographic film where the image is visualized and recorded.

A variation on this approach is Scanning Electron Microscopy (SEM). In SEM, the electron beam scans the surface of a sample that has been coated with a thin layer of gold. The beam of electrons excites the atoms of the sample causing them to eject electrons which are collected and converted into an image that is displayed on a monitor. The image that is produced has a great depth of field and thus appears to be three dimensional. SEM is used to reveal the surface details of various types of cells.

VIRTUAL LAB

**Go to the following site to experiment with a virtual scanning electron microscope. Answer the questions on Virtual Electron Microscopy given below.
VIRTUAL ELECTRON MICROSCOPE

A) There are three specimens to view shown on the left side
B) You can use the MAGNIFY button on the machine to zoom in on your specimen
C) Answer the questions on your experiences at this site below.


QUESTIONS
C) Virtual Electron Microscopy Questions

1) How many stem cells can you count?
2)
Which of the cells are larger the stem cells or the T-cell
3)
Which cell is the largest?
4)
Describe the shape of the Red Blood cell
5)
What do you think the pinkish strands are around the nerve fibers
6)
Does the electron microscope allow a higher degree of magnification than the light microscope? Why?

Click Here for a MS WORD version of the questions

Click Here for a PDF version of the questions


A Link to Another Virtual Electron Microscope

http://education.denniskunkel.com/Java-SEM-expert.php


Something Interesting About Measurements

View the Milky Way at 10 million light years from the Earth. Then move through space towards the Earth in successive orders of magnitude until you reach a tall oak tree just outside the buildings of the National High Magnetic Field Laboratory in Tallahassee, Florida. After that, begin to move from the actual size of a leaf into a microscopic world that reveals leaf cell walls, the cell nucleus, chromatin, DNA and finally, into the subatomic universe of electrons and protons.

Measurements Movie

Try this great interactive measurements animation. Slide the slider at the bottom of the interaction to view smaller or larger items.

Interactive Measurement Animation

Here is another one

Interactive Universe

How big are bacteria and virus?

Use this site to view the relative size of things like amoeba, skin cells, chromosomes, bacteria, etc. Use the sliding bar at the bottom of the page to zoom in to smaller objects.

Scale


END LAB 1


Lab Index Page 1 Page 2 Lab 2
Page 2